add cli parameter to verify local bloc integrity

reuse code for listing local blocks
add disk i/o speed limit on integrity check

src/garage/cli/structs.rs

@@ -282,6 +282,13 @@ pub enum RepairWhat {
 	/// Only redo the propagation of version deletions to the block ref table (extremely slow)
 	#[structopt(name = "block_refs")]
 	BlockRefs,
+	/// Verify integrity of all blocks on disc (extremely slow, i/o intensive)
+	#[structopt(name = "blocks_integrity")]
+	BlockIntegrity {
+		/// Limit on i/o speed, in B/s
+		#[structopt(name = "limit")]
+		limit: Option<usize>,
+	},
 }
 
 #[derive(Serialize, Deserialize, StructOpt, Debug, Clone)]

src/garage/repair.rs

@@ -63,6 +63,14 @@ impl Repair {
 				.await?;
 		}
 
+		if let Some(RepairWhat::BlockIntegrity { limit }) = opt.what {
+			info!("Verifying integrity of stored blocks");
+			self.garage
+				.block_manager
+				.verify_data_store_integrity(&must_exit, limit)
+				.await?;
+		}
+
 		Ok(())
 	}
 

src/model/block.rs

@@ -10,6 +10,7 @@ use serde::{Deserialize, Serialize};
 use tokio::fs;
 use tokio::io::{AsyncReadExt, AsyncWriteExt};
 use tokio::sync::{watch, Mutex, Notify};
+use tokio::time::Instant;
 
 use garage_util::data::*;
 use garage_util::error::Error;
@@ -197,10 +198,15 @@ impl BlockManager {
 		}
 
 		// 2. Repair blocks actually on disk
-		self.repair_aux_read_dir_rec(&self.data_dir, must_exit)
-			.await?;
-
-		Ok(())
+		// Lists all blocks on disk and adds them to the resync queue.
+		// This allows us to find blocks we are storing but don't actually need,
+		// so that we can offload them if necessary and then delete them locally.
+		self.for_each_file(
+			(),
+			move |_, hash| async move { self.put_to_resync(&hash, Duration::from_secs(0)) },
+			must_exit,
+		)
+		.await
 	}
 
 	/// Get lenght of resync queue
@@ -485,50 +491,107 @@ impl BlockManager {
 		Ok(())
 	}
 
-	fn repair_aux_read_dir_rec<'a>(
+	async fn for_each_file<F, Fut, State>(
+		&self,
+		state: State,
+		mut f: F,
+		must_exit: &watch::Receiver<bool>,
+	) -> Result<(), Error>
+	where
+		F: FnMut(State, Hash) -> Fut + Send,
+		Fut: Future<Output = Result<State, Error>> + Send,
+		State: Send,
+	{
+		self.for_each_file_rec(&self.data_dir, state, &mut f, must_exit)
+			.await
+			.map(|_| ())
+	}
+
+	fn for_each_file_rec<'a, F, Fut, State>(
 		&'a self,
 		path: &'a Path,
+		mut state: State,
+		f: &'a mut F,
 		must_exit: &'a watch::Receiver<bool>,
-	) -> BoxFuture<'a, Result<(), Error>> {
-		// Lists all blocks on disk and adds them to the resync queue.
-		// This allows us to find blocks we are storing but don't actually need,
-		// so that we can offload them if necessary and then delete them locally.
+	) -> BoxFuture<'a, Result<State, Error>>
+	where
+		F: FnMut(State, Hash) -> Fut + Send,
+		Fut: Future<Output = Result<State, Error>> + Send,
+		State: Send + 'a,
+	{
 		async move {
 			let mut ls_data_dir = fs::read_dir(path).await?;
-			loop {
-				let data_dir_ent = ls_data_dir.next_entry().await?;
-				let data_dir_ent = match data_dir_ent {
-					Some(x) => x,
-					None => break,
-				};
+			while let Some(data_dir_ent) = ls_data_dir.next_entry().await? {
+				if *must_exit.borrow() {
+					break;
+				}
+
 				let name = data_dir_ent.file_name();
-				let name = match name.into_string() {
-					Ok(x) => x,
-					Err(_) => continue,
+				let name = if let Ok(n) = name.into_string() {
+					n
+				} else {
+					continue;
 				};
 				let ent_type = data_dir_ent.file_type().await?;
 
 				if name.len() == 2 && hex::decode(&name).is_ok() && ent_type.is_dir() {
-					self.repair_aux_read_dir_rec(&data_dir_ent.path(), must_exit)
+					state = self
+						.for_each_file_rec(&data_dir_ent.path(), state, f, must_exit)
 						.await?;
 				} else if name.len() == 64 {
-					let hash_bytes = match hex::decode(&name) {
-						Ok(h) => h,
-						Err(_) => continue,
+					let hash_bytes = if let Ok(h) = hex::decode(&name) {
+						h
+					} else {
+						continue;
 					};
 					let mut hash = [0u8; 32];
 					hash.copy_from_slice(&hash_bytes[..]);
-					self.put_to_resync(&hash.into(), Duration::from_secs(0))?;
-				}
-
-				if *must_exit.borrow() {
-					break;
+					state = f(state, hash.into()).await?;
 				}
 			}
-			Ok(())
+			Ok(state)
 		}
 		.boxed()
 	}
+
+	/// Verify integrity of each block on disk. Use `speed_limit` to limit the load generated by
+	/// this function.
+	pub async fn verify_data_store_integrity(
+		&self,
+		must_exit: &watch::Receiver<bool>,
+		speed_limit: Option<usize>,
+	) -> Result<(), Error> {
+		let last_refill = Instant::now();
+		let token_left = speed_limit.unwrap_or(0);
+		self.for_each_file(
+			(last_refill, token_left),
+			move |(last_refill, token_left), hash| {
+				async move {
+					let len = match self.read_block(&hash).await {
+						Ok(BlockRpc::PutBlock(PutBlockMessage { data, .. })) => data.len(),
+						Ok(_) => unreachable!(),
+						Err(_) => 0, // resync and warn message made by read_block if necessary
+					};
+
+					if let Some(speed_limit) = speed_limit {
+						// throttling logic
+						if let Some(t) = token_left.checked_sub(len) {
+							// token bucket not empty yet
+							Ok((last_refill, t))
+						} else {
+							// token bucket empty. Sleep and refill
+							tokio::time::sleep_until(last_refill + Duration::from_secs(1)).await;
+							Ok((Instant::now(), speed_limit))
+						}
+					} else {
+						Ok((last_refill, token_left)) // actually not used
+					}
+				}
+			},
+			must_exit,
+		)
+		.await
+	}
 }
 
 #[async_trait]
@@ -598,7 +661,7 @@ impl BlockManagerLocked {
 		);
 		let path = mgr.block_path(hash);
 		let mut path2 = path.clone();
-		path2.set_extension(".corrupted");
+		path2.set_extension("corrupted");
 		fs::rename(path, path2).await?;
 		mgr.put_to_resync(hash, Duration::from_millis(0))?;
 		Ok(())